ATLAS - QC Summary

Contents

Summary

Total reads per sample

Step Output
raw the input reads
deduplicated after (optional) deduplication step
filtered trimmed, quality filtered
qc final reads, contaminants removed

Total bases per sample

For details see Table Table1.

Reads quality after QC

Paired end

Single end

Paired end reads that lost their mate during filtering.

Reads quality before QC

Downloads

Table1:
read_counts.tsv
2019-03-29