Quality Control Report
Number of reads troughout th quality control process
Step
Output
raw
the input reads
deduplicated
after (optional) deduplication step
filtered
trimmed, quality filtered
qc
final reads, contaminants removed
Total number of reads/bases ater the QC
Quality values along the read
Read length
Insert size
The size of the reads + the space between. Ideally the paired-end reads don't overlap.